Works in the editor, but not when I publish it.. what's wrong..?

I have been designing some simple ball related games and they have been working beautifully within the editor. However, when I attempt to publish the game to a web format or standalone about half of the functions don't work. I am using Javascript and I have a hunch it may be related to how I use BroadcastMessage, but I am unsure.

If anyone has had issues like this, I'd appreciate it if you'd share your wisdom.

Thanks, -Craze