Raycast from evemy to player is way to far down

So I've been trying to make a sort of detection system for a game, and using raycasts to find what is in the trigger zone of an enemy, using a box as a trigger for testing. I decided to use Debug.DrawRay, and the ray just keeps going down. I think it might have something to do with how I'm calculating stuff in my character controller. Here's the code for the detection I've been working on:

  public void Alert(Collider Other) {
         Debug.Log("Start");
         Ray ray = new Ray(transform.position,Other.transform.position-transform.position);
         RaycastHit hit;
         if(Other.gameObject.tag.Equals("Player"))
             if (Physics.Raycast(ray, out hit, 4))
             {
                 Debug.Log("If1");
                 Debug.Log(hit.collider.gameObject.tag);
                 Debug.DrawRay(transform.position,Other.transform.position-transform.position,Color.cyan);
                 Debug.Log(Other.transform.position);
                 if (hit.collider.gameObject.tag.Equals("Player"))
                 {
                     Debug.Log("If2");
                     mr.material.SetColor("_Color", Color.yellow);
                 }
         }
     }

And here's the code for the character controller:

 public class PlayerControls : MonoBehaviour {
     public float mSpeed = 3.0f;
     public float mSen = 2.0f;
     public float velocity = 0.0f;
     public float jSpeed = 15.0f;
     private float camRot = 0.0f;
     public float camLimit = 60.0f;
     public bool doubleJump = true;
     public bool ground = true;
     CharacterController cc;
     // Use this for initialization
     void Start ()
     {
         Cursor.visible = false;
         cc = GetComponent<CharacterController>();
     }
     
     // Update is called once per frame
     void Update ()
     {
         //rotation
         float rotHor = Input.GetAxis("Mouse X")*mSen;
         camRot -= Input.GetAxis("Mouse Y")*mSen;
         camRot = Mathf.Clamp(camRot, -camLimit, 90.0f);
 
         transform.Rotate(0, rotHor, 0);
         Camera.main.transform.localRotation = Quaternion.Euler(camRot, 0, 0);
         //Movement
         float fSpeed = Input.GetAxis("Vertical")*mSpeed;
         float sSpeed = Input.GetAxis("Horizontal")*mSpeed;
 
         if ((cc.collisionFlags == CollisionFlags.Sides && velocity <= 0) && (fSpeed!=0|| sSpeed!=0))
             velocity += Physics.gravity.y * Time.deltaTime / 15;
         else if (cc.collisionFlags != CollisionFlags.Sides || velocity >= 0)
             velocity += Physics.gravity.y* Time.deltaTime;
         if (cc.isGrounded)
             velocity = -0.5f;
         if (Input.GetButtonDown("Jump"))
         {
             if(cc.isGrounded)
                 velocity = jSpeed;
             else if (doubleJump && cc.collisionFlags == CollisionFlags.Sides)
                 {
                     velocity = jSpeed;
                     doubleJump = false;
                 }
         }
         if (!doubleJump && cc.isGrounded)
             doubleJump = true;
         Vector3 s = new Vector3(sSpeed, velocity, fSpeed);
         s = transform.rotation * s;
         ground = cc.isGrounded;
         cc.Move(s*Time.deltaTime);
     }
 }

EDIT: Picture for clarity: