Mouse Look is over riding my controller

I have a spaceship that I have a Spaceship contoller on show bellow and I have used Unitys Mouse look on the ship. The problem is my SpaceShipCont.js has the ability to make the ship do rolls and bank. But Unitys Mouse Look.c# is killing all controlls except forward and backwards on my spaceshipCont.js. (the back will be removed latter I know space craft dont usaly back up).

SpaceShipCont.js

 var Speed = 200;
 var TorqueSpeed = 20.0;
 var warpSpeed = 400;
 function FixedUpdate ()  {
 
 if(Input.GetKey(KeyCode.UpArrow)){constantForce.relativeForce.z = Speed;}else{
 if(Input.GetKey(KeyCode.DownArrow)){constantForce.relativeForce.z = -Speed * Time.deltaTime;}else{
 constantForce.relativeForce.z = 0;}}
 //Turn right and left
 if(Input.GetKey(KeyCode.D)){constantForce.relativeTorque.y = TorqueSpeed * Time.deltaTime;}else{
 if(Input.GetKey(KeyCode.A)){constantForce.relativeTorque.y = -TorqueSpeed * Time.deltaTime;}else{
 constantForce.relativeTorque.y = 0;}}
 //Rotate Up and Down
 if(Input.GetKey(KeyCode.E)){constantForce.relativeTorque.x = TorqueSpeed * Time.deltaTime;}else{
 if(Input.GetKey(KeyCode.Q)){constantForce.relativeTorque.x = -TorqueSpeed * Time.deltaTime;}else{
 constantForce.relativeTorque.x = 0;}}
 //Rotate right and left
 if(Input.GetKey(KeyCode.Z)){constantForce.relativeTorque.z = TorqueSpeed * Time.deltaTime;}else{
 if(Input.GetKey(KeyCode.X)){constantForce.relativeTorque.z = -TorqueSpeed * Time.deltaTime;}else{
 constantForce.relativeTorque.z = 0;}}
 
 if(Input.GetKey(KeyCode.W)){constantForce.relativeForce.z = warpSpeed;}
 
 }

And like i said the Mouse look is just the one that unity has with it.