Top part of stantalone client is from another scene

Hi there, so I've been making this RPG type game, and it works perfectly when run in debug mode inside of unity. But in the standalone client, the top (about a centimeter) is from the menu scene. Image here: http://i.imgur.com/qXq9nNg.jpg The script I use to change from the menu scene to the game looks like this if it's helpful:

 //MenuScript.js
 
 #pragma strict
 
 function Start () 
 {
 
 }
 
 function Update () 
 {
 
 }
 
 function OnGUI ()
 {
     if (GUI.Button (new Rect (64,694,160,64), "Play Game"))
     {
         Application.LoadLevel(2);
     }
 }

Has anyone got an idea about what's going on? Any help appriciated! (Other resolutions and quality settings doesn't make a diffrence, has been tested on another computer with the same error)