Gameobject not moving unless starting at 0 transform

I'm making a 2d game where the enemy is assigned a array of vector3's in the editor. That way I can set it's path along a grid of units that it moves to in a blocky way. It was working well but, after I changed the orgin point of the enemy gameobject off of 1,0,0 it doesn't work. I couldn't find any noticeable changes in any values while looking in the debug menu and I attempted to use some debug logs but they also didn't reveal anything. Note: I am using unity 4 as that's all my laptop supports.

Code:

 using UnityEngine;
 using System.Collections;
 
 public class EnemyMovementController : MonoBehaviour {
 
     //Set in editor by level basis, holds pathfinding data for enemy.
     public Vector3[] EnemyPathArray;
     //Path segment in the Enemy Path Array.
     int PathSegmentArray;
     //Speed for movement;
     public float EnemyMovementSpeed;
     //Timer on when the enemy moves.
     float Speed;
     float EnemyMoveTimer;
     //Temp float for testing the time between moves for ideal timeing.
     public float EnemyMoveTimerCapTemp;
     //Bool for moving enemy
     bool EnemyMoving;
     //Movement Array for enemy position.
     public GameObject Enemy;
 
     void Start(){
         EnemyMoveTimer = EnemyMoveTimerCapTemp;
         PathSegmentArray = 0;
 
     }
     void Update(){
         if (!EnemyMoving) {
             EnemyMoveTimer -= Time.deltaTime;
             if (EnemyMoveTimer <= 0) {
                 EnemyMoving = true;
             }
         }
         if (EnemyMoving) {
             Speed = EnemyMovementSpeed * Time.deltaTime;
             MoveEnemy();
         }
     }
     void MoveEnemy(){
         //Debug.Log ("Moving Enemy");
         Debug.Log (PathSegmentArray);
         Enemy.transform.position = Vector3.MoveTowards (Enemy.transform.position, EnemyPathArray [PathSegmentArray], Speed);
         //Debug.Log (test + "this.transform");
         //Debug.Log (EnemyPathArray [PathSegmentArray].y + "Target transform");
         if (Enemy.transform.position == EnemyPathArray [PathSegmentArray]) {
             PathSegmentArray += 1;
             if(PathSegmentArray > EnemyPathArray.Length - 1){
                 PathSegmentArray = 0;
                 //Debug.Log("Setting path segment to 0");
             }
             EnemyMoveTimer = EnemyMoveTimerCapTemp;
             EnemyMoving = false;
 
         }
     }
 }